184 lines
6.4 KiB
Python
184 lines
6.4 KiB
Python
"""列概况和预览:上传时在 Parquet 上用 DuckDB 计算,存进文件记录,供 describe_data、上传后的分析和接口返回"""
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import math
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import os
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from pathlib import Path
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from typing import Any
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import duckdb
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from app.datafiles.cells import EXACT_FLOAT_INT
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from app.datafiles.query import connect, json_value, quote_identifier
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from app.schemas.data_file import ColumnProfile, DataColumn, TableProfile, TopValue
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PREVIEW_ROWS = 20
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SAMPLE_ROWS = 5
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EXAMPLES = 3
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TOP_VALUES = 5
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# 去重值不超过这么多的文本、布尔列才给出现次数最多的值
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TOP_VALUES_MAX_DISTINCT = 50
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# 样例值从开头这么多行里取
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EXAMPLE_SCAN_ROWS = 1000
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PROFILE_CELL_CHARS = 50
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PREVIEW_CELL_CHARS = 200
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# 算列概况的线程数:在解析子进程里、只读自己刚写的文件,不受模型查询的线程限制;
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# Parquet 按行组并行扫描,见 parse.py 的 ROW_GROUP_ROWS
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PROFILE_THREADS = min(8, os.cpu_count() or 1)
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def profile_table(
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path: Path, columns: list[DataColumn], notes: dict[str, str]
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) -> tuple[TableProfile, list[list[Any]]]:
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"""返回列概况和接口用的预览(前 PREVIEW_ROWS 行)"""
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connection = connect({"t": path}, threads=PROFILE_THREADS)
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try:
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total, statistics = _statistics(connection, columns)
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head = connection.execute(f"FROM t LIMIT {EXAMPLE_SCAN_ROWS}").fetchall()
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profiled = [
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_profile_column(
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connection,
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column,
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stats,
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total,
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head,
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position,
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notes.get(column.name),
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)
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for position, (column, stats) in enumerate(zip(columns, statistics))
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]
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sample = connection.execute(
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f"FROM t USING SAMPLE reservoir({SAMPLE_ROWS} ROWS) REPEATABLE (42)"
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).fetchall()
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finally:
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connection.close()
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profile = TableProfile(
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columns=profiled,
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sample=[
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[json_value(value, PROFILE_CELL_CHARS) for value in row] for row in sample
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],
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)
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preview = [
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[json_value(value, PREVIEW_CELL_CHARS) for value in row]
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for row in head[:PREVIEW_ROWS]
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]
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return profile, preview
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def read_rows(
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path: Path,
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offset: int,
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limit: int,
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sort_by: str | None = None,
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descending: bool = False,
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) -> list[list[Any]]:
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"""读一页数据,单元格截断规则与预览相同;sort_by 必须是已校验过的列名,空值排最后"""
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order = (
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f" ORDER BY {quote_identifier(sort_by)} {'DESC' if descending else 'ASC'} NULLS LAST"
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if sort_by
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else ""
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)
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connection = connect({"t": path})
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try:
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rows = connection.execute(
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f"FROM t{order} LIMIT {int(limit)} OFFSET {int(offset)}"
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).fetchall()
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finally:
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connection.close()
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return [[json_value(value, PREVIEW_CELL_CHARS) for value in row] for row in rows]
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def _statistics(
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connection: duckdb.DuckDBPyConnection, columns: list[DataColumn]
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) -> tuple[int, list[dict[str, Any]]]:
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"""总行数和每列的统计值,一次扫描算完:非空数、去重数(估算),数值列的最小、最大、平均和四分位数,
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日期列的最小、最大
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四分位数用 quantile_disc 精确计算:近似算法在多线程下每次结果略有不同,同一个文件重新上传概况会变
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"""
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selects, layout = ["count(*)"], []
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for column in columns:
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name = quote_identifier(column.name)
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fields = {
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"count": f"count({name})",
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"approx_unique": f"approx_count_distinct({name})",
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}
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if column.type == "number":
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fields |= {
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"min": f"min({name})",
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"max": f"max({name})",
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"avg": f"avg({name})",
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"quartiles": f"quantile_disc({name}, [0.25, 0.5, 0.75])",
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}
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elif column.type in ("date", "datetime"):
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fields |= {"min": f"min({name})", "max": f"max({name})"}
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layout.append(list(fields))
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selects.extend(fields.values())
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row = connection.execute(f"SELECT {', '.join(selects)} FROM t").fetchone()
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values = iter(row[1:])
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return row[0], [dict(zip(fields, values)) for fields in layout]
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def _profile_column(
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connection: duckdb.DuckDBPyConnection,
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column: DataColumn,
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stats: dict[str, Any],
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total: int,
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head: list[tuple],
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position: int,
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note: str | None,
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) -> ColumnProfile:
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item: dict[str, Any] = {}
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if column.type == "number":
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quartiles = stats["quartiles"] or [None] * 3
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item = {key: _number(stats[key]) for key in ("min", "max", "avg")}
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item |= {
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key: _number(value) for key, value in zip(("q25", "q50", "q75"), quartiles)
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}
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elif column.type in ("date", "datetime"):
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# 和预览里的时间写法一致
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item = {
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key: None if stats[key] is None else stats[key].isoformat()
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for key in ("min", "max")
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}
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if (
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column.type in ("text", "boolean")
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and stats["approx_unique"] <= TOP_VALUES_MAX_DISTINCT
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):
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name = quote_identifier(column.name)
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counts = connection.execute(
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f"SELECT {name}, count(*) AS n FROM t WHERE {name} IS NOT NULL "
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f"GROUP BY 1 ORDER BY n DESC, 1 LIMIT {TOP_VALUES}"
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).fetchall()
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item["top_values"] = [
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TopValue(value=json_value(value, PROFILE_CELL_CHARS), count=count)
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for value, count in counts
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]
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examples: list[Any] = []
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for row in head:
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value = json_value(row[position], PROFILE_CELL_CHARS)
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if value is not None and value not in examples:
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examples.append(value)
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if len(examples) == EXAMPLES:
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break
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return ColumnProfile(
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**column.model_dump(),
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null_ratio=round(1 - stats["count"] / total, 4),
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# approx_unique 是估算值,小表上可能比非空值的个数还大
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distinct=min(stats["approx_unique"], stats["count"]),
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examples=examples,
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note=note,
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**item,
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)
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def _number(raw: Any) -> int | float | None:
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"""整数不带小数点,其余保留 6 位小数;Parquet 里的 inf、NaN 返回空"""
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if raw is None:
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return None
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value = float(raw)
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if not math.isfinite(value):
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return None
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if value.is_integer() and abs(value) < EXACT_FLOAT_INT:
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return int(value)
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return round(value, 6)
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